molecular-modeling

10 Steps to Use Avogadro Energy Minimization on Mac

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10 Steps to Use Avogadro Energy Minimization on Mac

Avogadro is a molecular editor and visualizer that can be used to create and manipulate 3D molecular structures. It is a powerful tool that can be used for a variety of tasks, including: Creating molecular structures from scratch. Avogadro has a user-friendly interface that makes it easy to create molecular structures from scratch. You can … Read more

5 Easy Steps to Superimpose Ligands in MOE

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5 Easy Steps to Superimpose Ligands in MOE

Superimposing ligands in MOE is a crucial step in structure-based drug design and molecular modeling. It allows researchers to align ligands with similar binding modes, facilitating the comparison of their interactions with the target protein. By superimposing ligands, scientists can identify common pharmacophore features, explore structure-activity relationships, and design new ligands with improved affinity and … Read more